PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g033810.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 336aa    MW: 37284.9 Da    PI: 9.8138
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g033810.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000493110522
                     TTTEEESSHHHHHHHHHH CS
         zf-C2H2   5 dCgksFsrksnLkrHirt 22 
                     dCg++Fsrk+++ +H   
  Csa18g033810.1  93 DCGTVFSRKDSFISHRTF 110
                     9**************865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.8E-45184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
LQLHKRGHNL PWKLKQRTNK SQVKKKVYIC PEKSCVHHDP ARALGDLTGI KKHFSRKHGE  60
KKWKCDKCSK KYAVVSDWKA HSKICGSREF RCDCGTVFSR KDSFISHRTF CDVLAEESAK  120
FFSVPSPLAT NTTISTIADT NSPVLVQSQL DQSLTGTGTD LNVNNNNTTL LGKNFTKSDP  180
IPQQANAFPL SPPPTRGTSD SVHNLWKLRE EEYSNQWLLN ECMNNNKSII RKGISTNQED  240
EIKKGNISSG SNSTDANIAS LFSYNQEAGN QASFSATTLL QKVAQMGSSS SSDTSTMLGL  300
MTSSIFNNRM PNSDGLNTKN KDEEWTRDFL GVKKP*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0264280.0BT026428.1 Arabidopsis thaliana At5g60470 mRNA, complete cds.
GenBankDQ0567310.0DQ056731.1 Arabidopsis thaliana zinc finger (C2H2 type) family protein (At5g60470) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483694.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X1
SwissprotF4JYZ80.0IDD13_ARATH; Protein indeterminate-domain 13
TrEMBLR0EX590.0R0EX59_9BRAS; Uncharacterized protein
STRINGAl_scaffold_0008_25450.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60470.11e-151C2H2 family protein